Victor Hugo Tierrafria Pulido

Genómica Computacional Técnico por honorarios

UNAM

Semblanza

Ligas

Scopus

 
 

Teléfono: (777) 3132063
Correo: [email protected]

 
 

Publicaciones

AñoPublicaciónPMID
2024Lara, P., Gama-Castro, S., Salgado, H., Rioualen, C., Tierrafría, V.H., Muñiz-Rascado, L.J., Bonavides-Martínez, C., Collado-Vides, J.. (2024). "Flexible gold standards for transcription factor regulatory interactions in Escherichia coli K-12: architecture of evidence types.". Frontiers in Genetics. 15():-. [doi:10.3389/fgene.2024.1353553]38505828
2023Lara, P., Gama-Castro, S., Salgado, H., Claire Rioualen, Tierrafría, V.H., Muñiz-Rascado LJ, Bonavides-Martinez, C., Collado-Vides, J.. (2023). "A Gold Standard for Transcription Factor Regulatory Interactions in Escherichia coli K-12: Architecture of Evidence Types". bioRxiv. ():-. [doi:https://doi.org/10.1101/2023.02.25.530038]
2023Karp, P.D., Paley, S., Caspi, R., Kothari, A., Krummenacker, M., Midford, P.E., Moore, L.R., Subhraveti, P., Gama-Castro, S., Tierrafria, V.H., Lara, P., Muñizrascado, L., Bonavides-Martinez, C., Santos-Zavaleta, A., Mackie, A., Sun, G., Ahn-Horst, T.A., Choi, H., Covert, M.W., Collado-Vides, J., Paulsen, I.. (2023). "The EcoCyc Database (2023).". EcoSal Plus. 11(1):-. [doi:10.1128/ecosalplus.esp-0002-2023]37220074
2022Femerling, G., Gama-Castro, S., Lara, P., Ledezma-Tejeida, D., Tierrafría, V.H., Muñiz-Rascado, L., Bonavides-Martínez, C., Collado-Vides, J.. (2022). "Sensory Systems and Transcriptional Regulation in Escherichia coli .". Frontiers in bioengineering and biotechnology. 10():-. [doi:10.3389/fbioe.2022.823240]35237580
2022Tierrafría, V.H., Rioualen, C., Salgado, H., Lara, P., Gama-Castro, S., Lally, P., Gómez-Romero, L., Peña-Loredo, P., López-Almazo, A.G., Alarcón-Carranza, G., Betancourt-Figueroa, F., Alquicira-Hernández, S., Polanco-Morelos, J.E., García-Sotelo, J., Gaytan-Nuñez, E., Méndez-Cruz, C.F., Muñiz, L.J., Bonavides-Martínez, C., Moreno-Hagelsieb, G., Galagan, J.E., Wade, J.T., Collado-Vides, J.. (2022). "RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.". Microbial genomics. 8(5):-. [doi:10.1099/mgen.0.000833]35584008
2021Díaz-Rodríguez, M., Lithgow-Serrano, O., Guadarrama-García, F., Tierrafría, V.H., Gama-Castro, S., Solano-Lira, H., Salgado, H., Rinaldi, F., Méndez-Cruz, C.F., Collado-Vides, J.. (2021). "Lisen&Curate: A platform to facilitate gathering textual evidence for curation of regulation of transcription initiation in bacteria.". BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS. 1864(11-12):-. [doi:10.1016/j.bbagrm.2021.194753]34461312
2021Keseler, I.M., Gama-Castro, S., Mackie, A., Billington, R., Bonavides-Martínez, C., Caspi, R., Kothari, A., Krummenacker, M., Midford, P.E., Muñiz-Rascado, L., Ong, W.K., Paley, S., Santos-Zavaleta, A., Subhraveti, P., Tierrafría, V.H., Wolfe, A.J., Collado-Vides, J., Paulsen, I.T., Karp, P.D.. (2021). "The EcoCyc Database in 2021.". Frontiers in Microbiology. 12():-. [doi:10.3389/fmicb.2021.711077]34394059
2019Centeno-Leija, Sara, Tapia-Cabrera, Silvana, Guzman-Trampe, Silvia, Esquivel, Baldomero, Esturau-Escofet, Nuria, Tierrafria, Victor H., Rodriguez-Sanoja, Romina, Zarate-Romero, Andres, Stojanoff, Vivian, Rudino-Pinera, Enrique, Sanchez, Sergio, Serrano-Posada, Hugo. (2019). "The structure of (E)-biformene synthase provides insights into the biosynthesis of bacterial bicyclic labdane-related diterpenoids". JOURNAL OF STRUCTURAL BIOLOGY. 207(1):29-39. [doi:10.1016/j.jsb.2019.04.010]30981884
2019Lithgow-Serrano, O., Gama-Castro, S., Ishida-Gutiérrez, C., Mejía-Almonte, C., Tierrafría, V.H., Martínez-Luna, S., Santos-Zavaleta, A., Velázquez-Ramírez, D., Collado-Vides, J.. (2019). "Similarity corpus on microbial transcriptional regulation.". JOURNAL OF BIOMEDICAL SEMANTICS. 10(1):-. [doi:10.1186/s13326-019-0200-x]31118102
2019Tierrafría, V.H., Mejía-Almonte, C., Camacho-Zaragoza, J.M., Salgado, H., Alquicira, K., Ishida, C., Gama-Castro, S., Collado-Vides, J.. (2019). "MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.". Bioinformatics. 35(5):856-864. [doi:10.1093/bioinformatics/bty689]30137210
2018Santos-Zavaleta, Alberto, Sanchez-Perez, Mishael, Salgado, Heladia, Velazquez-Ramirez, David A., Gama-Castro, Socorro, Tierrafria, Victor H., Busby, Stephen J. W., Aquino, Patricia, Fang, Xin, Palsson, Bernhard O., Galagan, James E., Collado-Vides, Julio. (2018). "A unified resource for transcriptional regulation in Escherichia coli K-12 incorporating high-throughput-generated binding data into RegulonDB version 10.0". BMC BIOLOGY. 16(1):91-91. [doi:10.1186/s12915-018-0555-y]30115066